mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCGCTGGGGCCTCCCTGTC CGGGGCGCCGCGGCCGGGC CGCAGGTACGCCCTCGCTGGGGCCTCCCTGTCCGCGGGGCGGGGCAGCGCGCCTTCCTCTTCCTGGGCAGCCTCGGGACGGGGCGCCGCGGCCGGGCGGGCAGCA CCGGGGGGGGGCGAAGGCCCGAGCGCGGCCCGGCGGGCGCGTGGTTTTTGTCAGGCGAAACGTACACGGCAGGTGTCCTGCGCCTCCTCCTCCGTCACCTGCCGCAGGTACGCCCTCGCTGGGGCCTCCCTGTCCGCGGGGCGGGGCAGCGCGCCTTCCTCTTCCTGGGCAGCCTCGGGACGGGGCGCCGCGGCCGGGCGGGCAGCATGAATAACCCTATACCTTCCAATTTGAAATCAGAAGCAAAAAAGGCTGCCAAAATATTAAGAGAATTCACAGAAATAACTTCCAGAAATGGACCTGATAAGATCATTCCTGCTCACGTAATTGCAAAGGCTAAAGGCCTTGCAATTCTGTCTGTGATCAAAGCCGGGTTCCTGGTGACTGCTAGAGGAGGCAGCGGGATTGTAGTGGCGCGCCTTCCAGATGGAAAGTGGTCTGCACCCTCAGCCATTGGGATAGCTGGCCTTGGTGGGGGATTTGAAATAGGAATTGAGGTATCAGACTTGGTGATAATT 3 2 5' arm Pongo_abelii mirnest 100 100 -53.8 .((..((.(((((..((((.(((..((((((((.((((((.((((.....)))).(((......)))..)))))))))))))).))).)))).))))).)).)). (-53.8)