mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGCTGTTTGATTTTCTTTTC AAAGAGAAGACACAACATCACTA AAAACTGTCAGAAAGAGAAGACACAACATCACTAAGATCAATATTTTTAGCTGCATTCACATTTGTTCTCTGCAGTTCGCTTTGCAAGTGCTGTTTGATTTTCTTTTCCAAGCGTTC CATATCCTCCTCAGAGTCAACCTTTGGTGGTCCCTCATCACTTAATCCAACCATAGCTGCTGCCTTCTCTTCATCCTGGGCAAATTGAAGTTGCTCAGTACGAGTAAACCGCGAACCTTTAGATGGCGCAGCTCCCTGAGAAAAACTGTCAGAAAGAGAAGACACAACATCACTAAGATCAATATTTTTAGCTGCATTCACATTTGTTCTCTGCAGTTCGCTTTGCAAGTGCTGTTTGATTTTCTTTTCCAAGCGTTCCCTCTTCTGCGCAAGGTATTCCTCTTTGGAGAGCCGGTGAAGCTAGTCCACTCTGATTCCATTCATTTTCCCA 3 2 3' arm Acropora_palmata mirnest 100 100 -19.3 ..........(((((((((..((.((((.(((((((((....))))).(((((((...((....))....))))))).((...)).)))).)))))).))))))))).......... (-19.3)