mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAAGTGAATTGTTTTGTGTTT ATATATAACAAAGATATGGG TTGGACATTACCAAGTGAATTGTTTTGTGTTTATACAAAAACTGGAAATATATAACAAAGATATGGGATGGTGCA GAAGCCGAAAACGAATCCAGAGAGAAGAAAATACGATCCGCCTTCATGAAAGTTAAAGCTTTTGCAGCATTTACAGGGATAGGGGGTGGTATGAAGAGAGAAAAGAACAATCTCACTGGATTGTACCCAACTTTTCTAGACGATTAGAAGACAAAACTCAAGAATAATAGCCTTGAAAAAGAGGAAGTTGCCAAGCTAGGCAAAGGATGAAAGTACTACCGGAGAAAAGCAGAGACACTTCATGCAAACAATACAGTTTTATAAAGATTTTTCTATATTTTCTTCATAACAATATTTCTTTTTCACAGTTCTAATTGTTTCGGGTGAAGATTAAACCATTTTCGTTCTATTTTAGTGGGTTTTGTGAGAAGTTGGACCCGGAAATACGTCACAACTTAACAGCTCTATAGAGACAATAACGAGTCTTTCGTTGTAACGTGTGACGATAGGTTTGGACATTACCAAGTGAATTGTTTTGTGTTTATACAAAAACTGGAAATATATAACAAAGATATGGGATGGTGCAATAATTATCGGGAGGGGGCCGAAAAACCATAGCGAGGGGGGGCATTACATAATAAAAATATTGCCAAGATAGGGGGCTCAAAGTAAAGTCACTTAAAGCATGACAATAAAAAAGGTATATATTTACTTGAAAGTAGAGGCAGGGGGATGTTATATTTAGCATAACAGA 4 1 5' arm Anemonia_viridis mirnest 100 100 -12.9 ((((......))))........(((((((....)))))))((((....(((((.......)))))...))))... (-12.9)