mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCAGAAGTTGTTAAAGCTGCT CAGCAGTAGCAGAGCTGTCT TCTTTGCAGCAGTAGCAGAGCTGTCTGAGAAAAAGGCAGAAGTTGTTAAAGCTGCTCAA GACAACAGGAAGAGCATTGAAAGTACGATCCCTGGCTCGGGATATGTCCTTGGTGCTATTTTGGGCCCTGTTCTGGAGCCTCTCCCACCCAAACCAGTCACCAAGGACGTCGGCCTCGTGAAGAAGAAGTTAGACCGCGAAAAGAAGAAGAAAAAGGAAGAAGAGGTTGCTCCTGCTGTCACAGAGGGAGAGGCAGCCAAGTCAGAATCCCCAGCTGTTGGTGAGGTCTCTACAGAGCCTGTAAAAGATGATGAAGTTGTCCTTGAGCAAGTAAGCAGTGAGACTGTCCCAGAGAGCAAAGTTGAGTTAGAACCAACAGCTCCTGCAGTACCTTCTGAGGCTGAAATTGCAGGTATTTCATCTGATATAGCTGGAGCTGAGACCCCAGGAACGGAATTAATCATAACCACCCCTGGTCAGCCTGAAAAGGCTCCTGAACCATCGAAAGAAGCTCCAGCTGTGCCTGACCTGGAGACACGTCTAGCTTCTGGTGAGATTGAACAAGATGTTGAAAATGCGACCCTAACAACAGCCCTGGAAGATTTAGCATCTGCAGCTCAAAAGCAACTCACTGCAGCACTGGCTTCAGCAGAGGATGCTGCTTTGGTCATTCGACAGCATGCAGAGAAGGCTTATCTTGCCATTGATGCAGGCCAAGACAAGGAGATCCTCTTTGCAGCAGTAGCAGAGCTGTCTGAGAAAAAGGCAGAAGTTGTTAAAGCTGCTCAAGA 5 1 3' arm Penaeus_monodon mirnest 100 100 -21.6 .....(((((..((((((..((((((.......))))))...))))))..))))).... (-21.6)