mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGCGCGGCGCTGCCGGACCA GTCCCTCAGCCCAGCGCTGTG TCGCGTTCCGGGGTCCCTCAGCCCAGCGCTGTGCCTGGGCCCATGGCCGCCTACTCCTACCGCCCGGGCCCAGGGGCCGGCCCAGCTGGAGGCGCGGCGCTGCCGGACCAGAGCTTCCT GAGAGGCGGAAGTGGCGCCGCCCCGGGCCTCTCGCGTTCCGGGGTCCCTCAGCCCAGCGCTGTGCCTGGGCCCATGGCCGCCTACTCCTACCGCCCGGGCCCAGGGGCCGGCCCAGCTGGAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAGGGTTGATAAAGACAGGAGCGGGGTGATATCGGACAACGAGCTTCAGCAGGCCTTATCCAACGGCACATGGACTCCATTTAATCCAGTGACTGTCAGGTCAATCATATCTATGTTTGACCGAGAGAACAAGGCTGGCGTGAACTTCAGCGAGTTCACTGGCGTCTGGAAGTACATCACAGACTGGCAGAACGTCTTCCGCACCTATGACAGGGACAACTCTGGGATGATTGACAAGAACGAGCTCAAGCAAGCACTCTCAGGGTACCGGCTCTCTGACCAGTTTCATGACATCCTCATTCGCAAGTTCGACAGACAAGGACGGGGGCAGATCGCATTTGACGACTTCATCCAGGGCTGCATTGTCTTGCAGAGGTTGACCGATATATTCAGGCGTTACGATACGGATCAGGACGGCTGGATTCAGGTGTCATATGAACAGTATCTGTCTATGGTCTTCAGCATCGTATAACACTGGCCTTTGCAAATAGCAGCATGACTTACAGAAGGAAAACTTAAAATGCCAAATCTCACTTTAAAGAAACGGTTCAGATGCAGCCAGATACTGTTCTTCTTTTAGATTTTATATAATTAACATTCGGGGGA 4 2 3' arm Ursus_americanus mirnest 100 100 -53.7 ....((((...(((((..((((((.(((((...(((((((((..(((..............))).)))))))))..(((((...))))).))))))).))))..))))).))))..... (-53.7)