mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAAAGAGAGCTGAGCCTGCCA GCAGCCGCCTTTTTTTCTG ACCCTGAGACAGAAAGAGAGCTGAGCCTGCCAGACATGGCAGCCGCCTTTTTTTCTGGACCATGT GATAGTGGAGCTGCCTACTCTGGACGATCTGAAAGTGCAGGAGGTGAAAGTCAGTTCTTCGGTGCTCAAAGCTGCCGCCCATCACTATGGAGTTCAGTGTGATAAGTCCAACAAGGAGTTCATGCTCTGCCGCTGGGAAGAGAAAGACCCCAGGCGGTGTTTAGAGGAAGGCAAGCTCGTCAACAAGTGTGCTCTGGACTTCTTCAGGCAGATAAAGCTTCACTGCGCGGAGCCTTTTACAGACTACTGGACCTGCATCGATTATTCCAGCCTGCAGCTGTTCCGTCGCTGTCGCACACAGCAGGCCAAGTTCGACGAGTGTGTGCTGGACAAACTGGGCTGGGTGCGACCTGACCTGGGAGAGCTGTCCAAGGTCACCAAAGTGAAAACAGATCGACCTTTACCGGAGAATCCCTATCACTCAAGAGCAAGACCAGAGCCCAACCCTGAGACAGAAAGAGAGCTGAGCCTGCCAGACATGGCAGCCGCCTTTTTTTCTGGACCATGTAAAGATGGGTCCGTGGCCCACACTCAGTCACACGCCC 1 2 5' arm Ursus_americanus mirnest 100 100 -21.4 .........(((((((((((.((.((.(((((....))))))))).)))))))))))........ (-21.4)