mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAATGTAAAGAAGTATGT ATACTTCTTTATGTACCCATA TTAGTAAAACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGCAATAAAC GACTGAGAGAAGAATATAAGTTAACCTCTGTAGTGACCTTGCTTGCAGACTTGACCTCTGGATATGACAAGGTGGCTTCACTACAGATCTACCAATTAATCCTGGAAACTAAAAAGCAAAACCAAACAAACAAACAAAAACCAAAAAACAACTTCACAGCAAGAAAGATACAGAATATTTCCTGAGAAGTCAGAAGAACCTAATGTATTCTGGAAAGAAGTGCTGAATCAGCGAATAGAGTGAAGGAACAATCAAGAGGAGATGGCTGCTGCTGATGAGACTCTCTAGGATCTAGAAGCAAACTACAAATAAGAAGAAATTCGCTCTGAAGACTATGAAGAAACACTAGGCTGATCTTACCAATTTCTGAAATATACTCTGTAAAAACTCCACTGATTCTATGAATCTCTTGCAAAAACAACCAGCAGGACAAAGTTCAACAGATAACTGGTTAGTGTTTAGAAGTGTCTATATCTACCAAGAACAAGGAGCCATAAATGGCACTAATGCCACGCTTCAGGTAAATGTGTTATAGTTTAGTCTTTGATAGTCTCTGCAAATGATTTACCACTGCTCTGTATCAGTAAGCTGAATGTTTTACTAACAAATGGGAAAATAAAACATTTCATGTTTTTACAGCTGACAACTTAGTAAAACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGCAATAAACTGCCAGGAGGGAACTACACTGCAGCTAAAAGAAGCCTTTGCTTCTTT 1 1 3' arm Ursus_americanus mirnest mir-1 3e-32 hsa-mir-1-2 5e-43 -32.6 .........((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).))))))........ (-32.6)