mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GACTGGACAAGCTGCGGAGCT CTAAGGCAGCTCGTCTGGTCCG CTCTTGGCGAAGACTGGACAAGCTGCGGAGCTTGGAGGACTCCTGAAGTATGTGCGACCCTTCTTGAATTCCATCAGCAAGGCTAAGGCAGCTCGTCTGGTCCGATCTCTTC CGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACGGTACCGGACATATGCCCGGGAATTCGGCCATTACGGCCGGGGGACGGTGTGAAAGCGGTAAGATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATTCTCCACTCCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGAGGCAGTGCAGGTCAAAGAGCAGAGTATCCTGGAACTGGGGTCTCTCTTGGCGAAGACTGGACAAGCTGCGGAGCTTGGAGGACTCCTGAAGTATGTGCGACCCTTCTTGAATTCCATCAGCAAGGCTAAGGCAGCTCGTCTGGTCCGATCTCTTCTTGATCTGTTTCTTGATATGGAAGCAGCTACAGGGCAGGAGGTCGAGTTGTGTTTAGAGTGCATTGAATGGGCCAAATCAGAGAAGCGAACTTTCTTACGCCAAGCTTTGGAGGCAAGACTGGTGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTTGGGTTCTCAGCTGCTGCGGGAGTTGAAAAAGATGGATGACAAAGCCCTTTTGGTGGAAGTACAGCTTTTAGAAAGCAAAACATACCATGCCCTGAGCAACCTGCCGAAAGCCCGAGCTGCCTTAACCTCTGCTCGAACTACAGCAAATGCTATCTACTGCCCCCCTAAATTGCAGGCCACCTTGGATATGCAGTCAGGTATTATCCACGCAGCAGAAGGAGAAGGACTGGAAAACTGCGTACTCCTATTTCTATGAGGCATTTTGAGGGGCTATGACTCCATCGAATAGCCCCCAAGGGCCATCACATCTCTGAAGTAACATGTT 3 1 5' arm Ursus_americanus mirnest 100 100 -33.3 .....((.((.((((((((.((((((..(((((.(((((.((..((((...((...)).))))..))..))).))....)))))...)))))).))))))))...)).)).. (-33.3)