mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCACATTGGTCAGCATTATTT AAGATGCTCTTGGATGGCCA TTAAAGTTAGAGAAGATGCTCTTGGATGGCCATTGAAAACTTGTGATAGTTTCGCTCATTCCATTGCACATTGGTCAGCATTATTTCCAGCGCCT CATTTATTTGGTTAAATTAATTAAAGTTAGAGAAGATGCTCTTGGATGGCCATTGAAAACTTGTGATAGTTTCGCTCATTCCATTGCACATTGGTCAGCATTATTTCCAGCGCCTGATGGGTCGCCTGCTCCAGGCCCTTGAACGATTCCCCTGAATGGGCAACAAAGTCCTTGAANCTCGTTGTAGTCC 5 1 3' arm Drosophila_auraria mirnest 100 100 -19.3 .....(((.((((.((((((....((((((.((.(((.....((((.....))))...))).)).)).))))....)))))).)))).))).... (-19.3)