mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTTTTTGTTTTTTTGTATTA ATACATAAAGGGCATATGCAAG TACATACATAAAGGGCATATGCAAGGGTTTTTTGTTTTTGTTTTTTTGTATTA AATGTGATTATAAAATATGTATATGTTGCAGACACTTAAATACCTTTTGGATGTATCGTAAACCTGTATTACAAAGTTTTGTATAAAATAATTACATACATAAAGGGCATATGCAAGGGTTTTTTGTTTTTGTTTTTTTGTATTAA 5 1 3' arm Drosophila_auraria mirnest 100 100 -10.5 ...(((((.((((((((...(((((.....)))))...))))))))))))).. (-10.5)