mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATACATATATACACATATAT ATATACATATATACATATATA ATATATACATACACATACATATATACATATATACACATATATATACATATATATATATATATATACATATACATATATATATATATATATATATACATATATACATATATACATATATATATATAA ATTCTTTTTTTTTTTTTTTGAAAGAAAAAGGTCTAGAAATAAAGATTAAACATTGTAATCAAGCATTAAAAACCAAGTTTGTGATCAAATATTGTAACCAAGGCTTAAAATAAGTTGTCTTGAGCATTCAAAACCTCCTTTATTCATCACTTAGCTGATACAAACAACTGCCAAAAGTAATTTTCTTTTTATTTTCAGGAAAATGTTTATTCCGAAGCATATATATATATATATATATACATATATATATATATACATACACATACATATATACATATATACACATATATATACATATATATATATATATATACATATACATATATATATATATATATATATACATATATACATATATACATATATATATATAA 5 0 5' arm Artemia_franciscana mirnest 100 100 -24.7 ..............(((.(((((((..((((((...((((((.((.(((((((((((((((((((........))))))))))))))))))).)).))))))...))))))..))))))).))).. (-24.7)