mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGACGGAGTCGTGAGGGGAA ATCTCATCTTTTTGCCCAG GGGCTTCCGATGGGACGGAGTCGTGAGGGGAACGGGATTCGAGGGGCAGCTGGCCATATCAGGAAATGCGAAGAGGGCCGCCGAACAGGAATACTATCAGAATATTCAATTGTACGAGTAGGGCAATCAATAAGTTGTCGATTTCACTCATTATCTCATCTTTTTGCCCAGTTGAACTG GTACAAAAAAGTTGGCCAAGGATGACGTGGCAATGAACGACCATCTCAAGGACGTGATCGACGTGAAGGAGGATCCGCTGGCGGCATTCATCATGAAGAAGCGACAGAAGGTGGATATTCAGAAGGGAAGGAAAGTGTATCCGCGGTACGAGGGGGCGTGGCCGCCGAATCGATTCGGTATCGCGCCGGGCTTCCGATGGGACGGAGTCGTGAGGGGAACGGGATTCGAGGGGCAGCTGGCCATATCAGGAAATGCGAAGAGGGCCGCCGAACAGGAATACTATCAGAATATTCAATTGTACGAGTAGGGCAATCAATAAGTTGTCGATTTCACTCATTATCTCATCTTTTTGCCCAGTTGAACTGTATGAGTAGAGCAGGTGAATCGGTTAAGTGTAGAGATCAATATTTACAACAAAAATATCTCCATTTCACTCACTTTGTTCAATTGTATGAGCAGGAGTGTCAACTTCTATATATACTTCGTCTATACTTCTATAGTTAACTTCTATAAGTTATCCATTTCACTCACTCATTATCTCATTGTTCTGTTAAGTTGTATGAGTAGGAGGATCGATTTCATGAGTAGATGAGGAGGGTTGATCAATAATTTAAAAAATCTCTCCATTTCACTCATTATCTCATCGT 3 2 5' arm Pristionchus_pacificus mirnest 100 100 -38.2 .((.(((...((((.(((((..((((((..((.(((....((..(((.....)))...))..(((((.(((.((..(((((((.(((.(((((.........)))))...))).)).))..)))..)).........)))))))).))).)).))))))..)))))))))...))))). (-38.2)