mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGAAGTGCGATGTCGATATC CATCGACTGTAATTCACGA NCAGCCTGCATTCATTGGAATGGCATCGACTGTAATTCACGAGACGACCCTACACAGTATCATGAAGTGCGATGTCGATATCAGAAAGGACCTGTATGCCAC ACTGAGGCCCCTCTTAATCCTAAGATCAATAGAGAAAAGATGACTCAGATTATGTTCGAAACCTTCAACACTCCCGCAATGTACGTCAATATCCAGGCAGTTCTCTCCCTCTACGCATCTGGAAGAACCACCGGAATCGTTCTCGATACTGGAGATGGTGTGACTCACACAGTTCCCATCTACGAGGGATATGCCCTTCCCCATGCCATCCAGAGACTCGATCTGGCTGGTCGTGATCTCACTGATTATCTCATGAAGATTCTTACTGAGAGAGGATATACCTTCACCACCACTGCCGAGAGGGAAATCGTGCGTGATATCAAGGAGAAATTGTGCTATGTGGCCCATGACTTCGAACAGGAAATGGCTACTGCTGCTTCCTCTTCAACTCTCGAGAAGAGCTATGAACTTCCCGATGGACAAGTAATCACCATTGCAAACGAGAGATTCCGTTGTCCTGAGGTTCTCTTNCAGCCTGCATTCATTGGAATGGCATCGACTGTAATTCACGAGACGACCCTACACAGTATCATGAAGTGCGATGTCGATATCAGAAAGGACCTGTATGCCACAC 4 2 3' arm Pristionchus_pacificus mirnest 100 gga-mir-3533 0.00002 -22.9 ...((.((((.((.((....(((.((((((.(((.((((.((.((...........)).)).)))).)))...)))))).)))..)).))..)))).))... (-22.9)