mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTTGTGTGTGCATTTTTAT AGAAATGACGTATGACAATC GCCAAGAAATGACGTATGACAATCTTTGTTGTGTGTGCATTTTTATA AGATAGAAGAAGTAAATGAGCAAATTAGAAAAGAGAAAGAGGAAGCTGAGGCTCGTATGCGACAAGCGTCTAAGAATGCGGAGAAGTCAACTGGTGGAGGTGGAAACAGCAGTAAAAACTGGTCAGAAGATGATCTACAGTTACTAATTAAAGCTGTGAACCTCTTCCCTGCGGGGACAAACTCAAGATGGGAAGTTATTGCTAATTACATGAACATACATTCTTCTTCTGGAGTCAAGAGAACCGCCAAAGACGTTATTAGCAAAGCAAAGAGTCTTCAAAGACTTGACCCTCATCAAAAAGATGACATAAACAGAAAAGCTTTTGATAAGTTTAAGAAAGAACATGGAGTGGTGCCTCAGGCAGACAACGCAACACCGTCAGAACGATTCGAAGGTCCAGGCACAGATTTCACCCCCTGGACAACAGAAGAACAGAAGCTTTTGGAACAAGCTTTGAAAACGTACCCAGTAAATACACCCGAGAGATGGGAGAAAATAGCAGAAGCCGTGCCTGGCAGGACAAAGAAGGACTGCATGAAACGATATAAGGAACTTGTCGAGATGGTAAAAGCCAAGAAAGCTGCTCAAGAGCAAGTGCTGAACGCAAGTAGAGCCAAGAAATGACGTATGACAATCTTTGTTGTGTGTGCATTTTTATAAT 2 1 3' arm Equus_caballus mirnest 100 100 -11.1 ....((((((((((((((((((...))))))))))).)))))))... (-11.1)