mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGTTTTGTTTTGTGTTTGTT CCAACCAGCCGGAGCCCCA GAATCGCTTCGGGGTTTTCTGGTGTTTTGTTTTGTGTTTGTTTTTTTTCCTTTCAGTAATAGAAAAATCTCTGAAAGACTTTGCTGACCAACCAGCCGGAGCCCCAGGAGCCCAAGAGCGCAGG TCATTGTGTTGGGACTACGCAGATCCTACCTGAAGCGCAAGAGGATTTTCTAAGGCACCAGCGCCAGAGATGCTCAAGGGCCTGCACCGAATCGCTTCGGGGTTTTCTGGTGTTTTGTTTTGTGTTTGTTTTTTTTCCTTTCAGTAATAGAAAAATCTCTGAAAGACTTTGCTGACCAACCAGCCGGAGCCCCAGGAGCCCAAGAGCGCAGGGGAGCCCGGGGGCCACTGGACGTCCGGCCTGCTCCCGGCGTGGAAACCCCGCAGCCTTAAGAGACAGGGGCCCCCCTGCTCTCTCTCCCCTCCCCTGTGTCCGCCTGTGTCCTCTCTGGTAGTCCTCTCCTGCCTCGTTGCCCCTGGATCTTGGTCTTTTGAGTGCCTTGGAGGTTTCTCTGCCCTCCCGTGAGGATCAGAGACTGTCCCCCTTTTTTAACTTTGACAATTGACTCTCAGTTCCTTTTCTAATTTTTATTATTTTTTAAACAATCCAGGACGACCCCCAGCTCTGCTTCCTTCAAGGCCCAGCATGGCCTGGGTCTCCATTCCACACTTGGCAGTTTGAAACGGCTCAGCCCTTTTCTCTCTCCCATGTCTGCTGCAGGCATGGCTGTCTCCTGCGCATTCTGGCCTGTACTCCAGCTCTGGGTGCCCTGCTCCCTGCCACAGTCCCCTCGCCTTCCGATGCCTTAAAGCCAGGCCCCAGGCCCCGCTGGCCAGAGCCTCTCAG 3 2 5' arm Equus_caballus mirnest 100 100 -31.3 ....(((((..((((((.((((.((((((..(((.(((.(((.......(((((((..((......))..)))))))........))).)))))).)))))).))))))))))..))))).... (-31.3)