mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATGTGTGTGTGTGTGTCCAT CGACGCACAAGCCACTGGTA GGTCTGCTCCGTCGACGCACAAGCCACTGGTAACGTTTGTTAATAGAGTATGTGTGTGTGTGTGTCCATGTGCATCAC CAACAACAAAAAGAAAAGCCCTGGCAGTGGCTTCCCTCTGTCCAGCCAAGTTCCAGATGTGATGGTGGTGGGAGAGCCCACGCTGATGGGAGGGGAGTTTGGCGACGAGGACGAGCGCCTGATCACGCGGCTGGAGAACACGCAGTTCGACGCGGCCAACGGCATCGACGACGAGGACAGCTTCAACAACTCCCCGGCGCTGGGCTCCAACTCGCCCTGGAACAACAAGGCCCCCTCCAGCCAGGAGAGCAAGAGCGACAACCCCACCTCACAGGCATCGCAGTAGAGCCCCGCCATCTCAACACAAACCCCCTCTCTGCCACTCCTCAGACCCCCCATCCCTACCCCGACAGCCACGAGTGCAACAGCAGCAACCCAGACATCACTGTAGAGCTCAGAGTCATCACACACACGGGCCCGAGGGGGCTTGGCATGTCTCAGGCAACGTCACTGAGCCAATGCTGTGACTCCCCCATATTTAACCACTGTGTCTCCCCTCTTTCTCCCTTTTCCTCGTCGCAAATGTCCCGTCAGAGATCGGGTGGATGTGACCGAGGAGGCGCAAGGAATTTAATCCAGGGGAGAACTGTGCACACTAAACCATCCGTACTGAATAAACATGTAGGGCCCGGGGTGGAGGGGATGGTGTCAGCGAGGCCACAACATGGTGGCGAGTTGCTTAGGGACCACTTGTCCACCCGTCACCCAAAACATGCCTCTCAATTCTGGTCTGCTCCGTCGACGCACAAGCCACTGGTAACGTTTGTTAATAGAGTATGTGTGTGTGTGTGTCCATGTGCATCACCTCTTGTATCGAACCTGAGGGGAAGCGGATCA 5 1 3' arm Dissostichus_mawsoni mirnest 100 100 -21.1 ....(((..(((.((((((((.(((((...((((....)))).........))).)).)))))))).))).))).... (-21.1)