mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTGGTTATCTAGCTGTAT AAGGCTAGATAACCGAAAGTA AGCCTTAGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGATGTACATTCTTCATAAGGCTAGATAACCGAAAGTAACAAGAATCCCATTACAC CCGAGCTGCACGCTTCTCCTGCCGGGGAGCAGAGCACAGACACACCGTCAAAGCTTGGACCATGTGGCTTCGCCTGCAGCGTGAGAGGATGGGTAGCCTTAGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGATGTACATTCTTCATAAGGCTAGATAACCGAAAGTAACAAGAATCCCATTACACTCCTGAAAAGGCATCAAGACCCCAAAACGCGGCACCTTACAAAAAAAAGCACAAACTCCACATGCGAGCAGAACATGGACAACATTTAAAAGGAGATGGGAGTCGACAGCAGCAAAAGGTTTCCAGAACCTCACCACTGAAGGAAAGCTGGCAAAAGGAGACTGAAAAACAGAGGAGAAGAAGAAGAATATGGAGGAGGAGGAGGGGTTGCTGTTGATTCTGCCCTCCCTCTCTCCTCACCCTCCTCTGCATCGCCTCCTCCCTTCCTCCCTTCCTCCTCCGCTCCATCCTCAGCCCCTTTTTCCCGTACAGCGAGACGCAGCCCTCGCCACCATCTTAGAGCAACGCTGGCATGAAATGGAAGTGGAAAGACCAGTGATCACTGCA 2 0 5' arm Dissostichus_mawsoni mirnest mir-9 4e-16 tni-mir-9-1 3e-35 -40.8 .......((((((..(((((((.(((((((((((((((.((((((.(((....))).)))))).))))))))))))))).))))))).))))))....... (-40.8)