mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAGGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATG TAGCCTTAGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGATGTACATTCTTCATAAGGCTAGATAACCGAAAGTAACAAGAATCCCATTACACT CCGAGCTGCACGCTTCTCCTGCCGGGGAGCAGAGCACAGACACACCGTCAAAGCTTGGACCATGTGGCTTCGCCTGCAGCGTGAGAGGATGGGTAGCCTTAGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGATGTACATTCTTCATAAGGCTAGATAACCGAAAGTAACAAGAATCCCATTACACTCCTGAAAAGGCATCAAGACCCCAAAACGCGGCACCTTACAAAAAAAAGCACAAACTCCACATGCGAGCAGAACATGGACAACATTTAAAAGGAGATGGGAGTCGACAGCAGCAAAAGGTTTCCAGAACCTCACCACTGAAGGAAAGCTGGCAAAAGGAGACTGAAAAACAGAGGAGAAGAAGAAGAATATGGAGGAGGAGGAGGGGTTGCTGTTGATTCTGCCCTCCCTCTCTCCTCACCCTCCTCTGCATCGCCTCCTCCCTTCCTCCCTTCCTCCTCCGCTCCATCCTCAGCCCCTTTTTCCCGTACAGCGAGACGCAGCCCTCGCCACCATCTTAGAGCAACGCTGGCATGAAATGGAAGTGGAAAGACCAGTGATCACTGCA 2 0 3' arm Dissostichus_mawsoni mirnest mir-9 4e-16 tni-mir-9-1 3e-35 -40.8 ........((((((..(((((((.(((((((((((((((.((((((.(((....))).)))))).))))))))))))))).))))))).))))))........ (-40.8)