mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATGGGACGGAGGGAGTACTG GTACTACTCCGTCCCACAAT GATAATCAGTACTACTCCGTCCCACAATATAAGACGTTCATCTTATATTATGGGACGGAGGGAGTACTGTAGAA CTCTTCCACCATAATGCAAAGTCACACTCATTATCACTGATGAGATGATAATCAGTACTACTCCGTCCCACAATATAAGACGTTCATCTTATATTATGGGACGGAGGGAGTACTGTAGAAGACGACAAGCGCGCTTGCTTGATAGAAGTGCAAGTTCTTTGATCTGGATCGCCTAATACATACACTGGGTTTGCTCGGCCAACTGAAGCTACACTGTCTATTCTGGTCCCTTCAGCTGTCCGACTCATCAGAGTCGCTCCTATCAGCCTCAGCTTCTTCACCGTGTGCAGCAGGCTCTTGAACGTCGGGCTTGGGTGCCGGAGCTGGTGCAGCTTTCTTGCGATCACCACCTTCACCACCTCCAGCTACACTAGCATTCTGGTTGACAGGCACTCCTTGCATAATACTCATAAGATCCTTCTCAACTCGGTGAACAAGCTCAGCACTCAAGTCAGGCTCTCTGCGAAAACGTCGCCTGCATGCATCCCTCATTGGAGGAGTAAGTCCATGCTTGTATTCAACTCCTTCTGGAGCAGGATCATCTTCTTCTCTTACCATTACCATCTGCCCAACATCAGCAGTTTTAACTAAAAAGGAATCATCATATGTCTTATATGACTCCACAACGGTTGGGAGATCCAAGAGAGATGCAGGAATCCTCTGGTTACCAATCATAAAGGTTCCGCTTCTTCCATCCTCTG 2 1 3' arm Elymus_wawawaiensis_x_Elymus_lanceolatus_mixed_EST_library mirnest MIR1122 0.00000006 tae-MIR1120 0.00000001 -36.6 ......(((((((.((((((((((.(((((((((......))))))))).))))))))))..)))))))..... (-36.6)