mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTTCCTCCGTCCCATAATAT AGTATGGGACGGAGGGAGTAG ATCAACAAGATACTTCCTCCGTCCCATAATATAAGAGTGTTGCGTTTTTTACTCAAAAACGTTCTTATAATATGTAGTATGGGACGGAGGGAGTAGTATGCATA TACATTCAATCACCATACAGAAGAGCAGGGTNNNACTACGGATGAAATCAAACGATAAAAACAGGACGGAGGGAGTATAAAATTCTCCTACTAGCAGATGCCTGTTTCAAAGCGGACGCCACTAATTATCTACACATATAATGATTTTACAACTAGTGAAACCCATAGATTTTGTCATGAACACCGCATGCATCAACAAGATACTTCCTCCGTCCCATAATATAAGAGTGTTGCGTTTTTTACTCAAAAACGTTCTTATAATATGTAGTATGGGACGGAGGGAGTAGTATGCATAGTCTCTGCTCGATCATATATTTAATCTTCGTATCTCGCACATAGATATGCCAGCTTTTCTCATCCAGTAAATCACACAGGTGCAGGTTTTCCTTTGAACTCTCTGATCTCGGAGTAGCTGTGATCTACAAGCAACTTCAGCATGCAGGCTTTCATATATGTGACTACCCACGCCGCCACGATGTTCATCACAGCTAACATTCCATCTAGTTGGTGGCTTGACCGTGACATCGCACTTCGTAGCTGACGTGAAAGAAAAACTCAACAGTTGCGACACACTTAACGTTTTGAAGTTTATGACAAAAGTGTCGCGGTTGTGGAAGCCCGTTCCTCTCGAGCAAGATCTATAGCNNNAATTTGCTTGACACGTCGACTATCTTCACGTGAGTTCCTTCCTGCTCGGGTCTTCATACGCGCTTAAGCATCT 1 0 5' arm Elymus_wawawaiensis_x_Elymus_lanceolatus_mixed_EST_library mirnest MIR806 0.0000004 hvu-MIR1120 0.000005 -39 ..........((((((((((((((((((.((((....(((.((((((((.....))))))))....)))...)))).))))))))))))))))))......... (-39)