mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTCCCTTCGTCCCATAATGC ATTATAGGACAGAGGGAGTAC CTGGCGATAATAAAATGTACAAAAATGTACTACTCCCTTCGTCCCATAATGCAAGACGTTTTTTACACTACACTGGTGTCAAAAAATCGTCTTACATTATAGGACAGAGGGAGTACAAGACTGTAGAAATTAAACCGAGCGTGA TGCGGACAACATTACAAGACTGCTACTGCTACAAAATCCCTTTGTTATTCGCCTTGAGATAGGCGTCAAGACGGCGGGTCTACTGAGCAACTCCCGACTTGCACGTCAAATGTACTGGCGATAATAAAATGTACAAAAATGTACTACTCCCTTCGTCCCATAATGCAAGACGTTTTTTACACTACACTGGTGTCAAAAAATCGTCTTACATTATAGGACAGAGGGAGTACAAGACTGTAGAAATTAAACCGAGCGTGATTAACTGCACACGTCCAGACAGCGGTTCCAGGGATTCAGTAGCGCTGCAATGCAGTGTTCTACTCCTAAATTTGATCCCAGTCAATAGACCCGTGGTTTTCAAAACTGTAACCAGGTTGCCGACGGTTGCGACCCAGTTTGCTCATCGTGGCAAGGCCTTCGATGACTTTGTAAAGTGACGACCACCACCTATCAGGTGGAACCTGATACTCGGTGAGTGACTCCTCGATTTCAGTGTTGTGCTTCCCTTCAAGGACGCTCTGCAGGGTGATTACCGCGTCCTTTGTTTTCCTGAGGATGTTGTTTCCCTCGGCAACCTCCAACGAGAGAAGGTCGCTGTGGGATGACGCGNGGCTAGCAGCAAGCGCAAACTGGGCAGCAACAGCCCATCTGTTAGACGCAGCCCATTTCCTCTGAATATCTTGCAACTTACTTTCTTCCTTTCGCAGCCTCTCTTCACCATTCCCAAGCACAAGAGACTTANGATATTCTGCATTACTAGGTCCTGTACTCTGAACCATCTT 3 0 5' arm Elymus_wawawaiensis_x_Elymus_lanceolatus_mixed_EST_library mirnest MIR1122 6e-16 tae-MIR1130 0.0004 -44.2 .((....)).......(((((....))))).((((((((.((((.((((((.(((((((((((((((((.....))))).)))))).)))))).)))))).)))).)))))))).............................. (-44.2)