mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTCTTTACAGAGGGAGTA CCCCCTCTGTAAAGAAGTATA AGTTTAATACCCCCTCTGTAAAGAAGTATAAGAACGTTTAGATCACTACTTTAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTACCTTAT TTGGGAAATCTCAAAATTAGGCTAGGCTCTGATTTAGAAGTTTAATACCCCCTCTGTAAAGAAGTATAAGAACGTTTAGATCACTACTTTAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTACCTTATAATCATGAACCCTGATTGTATCAAGTGAAATGAAAAGGGAGAATGTTCTCTGGCTTAAGATCCGTGTGAATAAGCTGCAGGTCCTACAATTGTAGTTGGATAACATAGTTGTGCATCAGCATGTCACATGTCCATAAGTTGTGTCAGCATAGAAATCAGATGACCAAAAATCTGCAATACATCAACTGTACAAAACAAATGAAATGTGGATTAGTAACTTGATATAAAGGCATAATTATAACAGCCATATGCAACAGCTGACAGGATTGCAACCATCCTCGGACTCTGAAATCAAAACTAAAGGTGTATTGGACACACTTGTGATGTCAGCGATAACATGAGACAACCTGGAAATGATTCCCACACTGACTACCTCAACCATTACATTCAAGACTGCATCAGTAGATAAAAAGGAAAATTTTAAAGGCAACAATCACCTGTTTTGAGTTTTGTACTAACGGTTCCAACCGGAAAAGCATATGTCAATCTGTAGTCCAACAATTGGCAATTGAAGTGATTCAATGTGCACTGATTCTCCATGATGCTAGTATAGGACTGGATATCATCTTCTTCTTGTTAAATGAGAAAATAGTTTGGGAAATTGAAGCGAGAACCAGACTCACTTCAAGCATACACCAACTCACCGACTTCAATT 1 0 3' arm Elymus_wawawaiensis_x_Elymus_lanceolatus_mixed_EST_library mirnest MIR1122 4e-28 tae-MIR1121 2e-29 -48.3 .......(((.((((((((((((((((((((((..(((((((((((((...)))))))))))))..)))))))))))))))))))))).)))...... (-48.3)