mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAGGCTGGCTCTGGGACAGC CGTCCTGGCTGCCCTTGAA CGCACCGTTAGCTTCTCGATGACGTCCTGGCTGCCCTTGAACAGAGGCTGGCTCTGGGACAGCACGGGCAGAATGGTCACAC TTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCCATAAGGGGGNNGNGNTNANNNCAGANANCAACAGATTGCACTTTATTAGGACACACAGAGCGCAGATCTGGCTAATCTTTGGACACGCAAAGCGTTGCACACTTTTCCAACTTAAATAGAAAGATTTGCTAAAAGGGAGTATGCCAATCCGGTGGTTTGGACACAAGACACAAAGGCGCTAATGAAGTACACAATCAAGGGAATTCGTGGGATGAATGGATGTATGCTGGTTCCTAGGCGTTGGCAAAGTCAATGCCCTTCTGGAGGTTCTTCTTCAGCTCAGGGATGGCGGCCTCCAGCAGCTTCTTCTCGTAGTCATTGAGCTTAGGCAGACCCAGGTTCTCTTTCAAACCTGACTTGCCCAGCACCAAAGGGGTGGAAAAAAAGGTGGCCTCCGTGATGGTCGACTGCACATAGGAGCACTCGATAACGTTCTTCTCGCCGTTGAGGCCCTTCAGCAGGGATCCAGCAAAGCGGGCACCGGCATAGGCCATCGAGAGGGTGGCTGAACCGGCTCCAGCCTTGGCTTTGACCACCTCAGTGCCGGCCTCCTGGATGCGCACCGTTAGCTTCTCGATGACGTCCTGGCTGCCCTTGAACAGAGGCTGGCTCTGGGACAGCACGGGCAGAATGGTCACACCCGAGTGGCCGCCGATCACGGGGATCTGCACTGTCTGTGGATCAACATTCACGGCATGGCCGATGAAGGCGCGGGCACACACCACATCCAGGGTGGAAACACCGAACAGACGATTGGGATCGTAGACACTAACCTTCTTAAGGATCTCGGCAGCAATTGGCACGCAGGTGTTCACGGGAATCCGGAAGATGGCTATCAGGGCCCTTGGGGCAATTTCTTGGCAATGGAACCTGGCAAATGCCCCTGAAAGAAGCCCGGCGGTCCCCGGTTGAAACAAAATCATCCCCGGGGCCATGCCCCGGGTTTGCCGGGGAAACCTCCCACGGGGGAATGGAAAACCCCAAATTCTGAAAGCCCCTTTCAGGGGAATTCCGCCCCCAGGCGGGGAACCGCGCCCCCCCATGGAAAATCCCAAACAAGTCCTTGTGCTCCTTGTGGGGGTACAATGGTGGGGAAAAAGATAGTGGGGGGGGCCCCCCACCGGGGGGGTGTCGCACAAAAGTTGTCTAAACAGAAAAAAA 4 2 3' arm Drosophila_pseudoobscura mirnest 100 100 -26.9 ...((((((..((.((((.((..((((((((((.((((.....)))).)))))..)))))..)))))).))))))))..... (-26.9)