mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGGCCCCTTCCCCCTGGGG CGAGAGGGGGAGGCGCCTTCCC CCTCGAAATTCCCGAGAGGGGGAGGCGCCTTCCCATGGACGTGACCGTATTGGGCCCCTTCCCCCTGGGGGACAGGAAA TTCCTTTTTTTTTTTTTTTTTATTTTTTTTACTATAAAAGAAAAGNNGGGNGNNAAAGGGGNNNNNNAANCCCCTTCATGGGGAGNNANGGANNNNNGGANNNANGGANNNGGGNAANNAGGAAGGGAAAAAGAAGGAGAGGGGGCCTTACAACACCCACNCCNCAGCCGCCGGCAACACCGGGGCCGCGGGCGCCAGGGAGCCAAGGAANCACCCCAGGGGCAGAAACCAAAAGGAGAACACCCGCAACCGCGCGGGCGACAACGACGGCGGCACAGCACGAACCAAAACGGGGCCCGCGGAGACAAGGAGACCCGGGAGGAGCAGCAAAGCCACGAAGACACCCCAGAAGCCAAGGCGAANCGGATTTTTAGTGACAATGTCGTCGAGCAGCGTCTGGGCCAGGTCCTTGTCATCGTTATTCTCGTACAACTTGGCAAAGGCCACAATGAGGTTGATGGGCTCTGGGTTTGGCAGCGAGCGCAGGGCCCGTTGCAACAGGGAATGAACCTGATCGGATTTTCCCAGCCAGAAGTAGGCTTCAGCCACCAGACGCCACACCTTCGGCTCAAACTTGAACTTCTTCAAAAGGATGACGAGCACCGAGGAAAGGCGCTCCCGTTGGTTGTTCTTCTTCAGAATGGCGACCACACCGAGGTACGGCTCCAGGGGATAATTGCTCTGCAGGGCCTCCTTGAGCACCTCATCAAAGTTGTTGCCGAAAAAGAACTCCATGCTGAGCAGGGAATTCCAAATGTATCCGCAGTTCCGGGCGGTTCGCGGAAAGGAAAACCTTGCCAATGGCTCCTTCGGGCCAAAATCGCGTGGCCATCTCAAATCTCGGGGGTGGGAAATAAAAGGAACGAAAAGGGACCTTCAACCCAGGGAAATGGACTGGTGGTTGGGGTTGCGCAAAAGACAACAAAAGTTCAGTACGGGGACAAAAGGGGCCCCCGATCAAGCACGGGGGGAAAGGGCAATTGACGTTTCCTCGAAATTCCCGAGAGGGGGAGGCGCCTTCCCATGGACGTGACCGTATTGGGCCCCTTCCCCCTGGGGGACAGGAAAAGCAACTTTTATATTTTGTTGGAAAAGTAGATACCGGAGATATAAGAAACGAGAGGGGTGGAGAACAATCTACTCTCCCCACAGTGAAGGTGGGAAGGACAATCCTTTTCGAATGAGGAGGTGTATAAGAAAGCCCCTTCCCCACA 4 1 3' arm Drosophila_pseudoobscura mirnest 100 100 -30.5 ........(((((.((.((((((((.((((....((((......))))...)))).)))))))))).)))))....... (-30.5)