mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGGCAGCGGCAGGAGGAGC TACTCCTTCGTGTTCTCCCG TGCGCAGACAGCTACTCCTTCGTGTTCTCCCGGGACCCCCACGGCCTGCCCCCGGACGTGCAGAAGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTGA GGCCGGGCGGAGCGCGACTGCCGAGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGCTTCGCGGGTACCTGGTATGCCATGGCCAAGAAGGACCCCGAGGGGCTCTTTCTGCAGGACAACATCGTCGCCGAGTTCTCCGTGGACGAGAACGGCCACATGAGCGCCACGGCCAAGGGCCGCGTCCGTCTCCTGAATAACTGGGACGTGTGCGCGGACATGGTGGGCACCTTCACAGACACCGAAGACCCTGCCAAGTTCAAGATGAAGTACTGGGGCGTGGCCTCCTTTCTCCAGAGAGGAAACGATGACCACTGGATCATCGACACGGACTACGACACGTTCGCTGTGCAGTACTCCTGCCGCCTCCTCAACTTCGACGGCACCTGCGCAGACAGCTACTCCTTCGTGTTCTCCCGGGACCCCCACGGCCTGCCCCCGGACGTGCAGAAGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTGAGCCGG 4 1 3' arm Oryctolagus_cuniculus mirnest 100 100 -33.2 ....(((((((((.(((((((((..((((((((......((((.((.......)).))))......)))).))))..)))).))))).))))))..))). (-33.2)