mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAGGGAGGGTGGAGGAAGAGC TTGTGTCACCTGCTCTTTA GAGCGGCCGCCCTTTTTTTTTTTTTTTTTTTGCTTGTGTCACCTGCTCTTTATTGGCTGCCATGGGTGACCGGAGTCCCCAGCAGTGGCACTACGTAGAGGGAGGGTGGAGGAAGAGCGGGAAGGGAAGGGAAGGGAAGGAAGACGAG GAGCGGCCGCCCTTTTTTTTTTTTTTTTTTTGCTTGTGTCACCTGCTCTTTATTGGCTGCCATGGGTGACCGGAGTCCCCAGCAGTGGCACTACGTAGAGGGAGGGTGGAGGAAGAGCGGGAAGGGAAGGGAAGGGAAGGAAGACGAGCCCCACGCCTGTTCTGGGGTCCCCCCGGCCCAGGCACCGGAGGGCCTCGGTGGGGGCAGCGGGCTCAGGACGAGGGCGCCGAGCTGGGCTTCTCCTCCCGGGACACGGGGATGGCTCGCTCGCTGTGGCCAGCGTCCAGGCCGGACTGCACCTTGGGGCCGGAGAAGGTGAGCATGCCGTCCGCGGAGAGCGAGCAGGACAGCGCCGACTGGTCCACGTTGGAAGGCAGGCGGTAGCGCCGGTGGAACTCGCGGGAAATGTAGCCGTGGTCATCCTGTCTCTCGTTGTGTTTGCCGTGGATCTCCACGAAGTCCTCCTGCACCTTCACGGTGAGGTCCTCGGGCGAGAAGTGCTTCACGTCCAGGAAGATGACGAACTTGTCCCGGTCGGACCGCACCTCAGAGATGCCGGAGTCCAGCACGGTGCGGAAGAGGGACTGGCGGTAGTAGGGGCTGATGGTGGACGACAGGAAGGGCAGCAGGTCATACTCGAAGAGGCCCTCACCGAAGAACTGGTCGAACAGCCGGCTGGGGTAGAAGGGCCCCAGGGTGCGCTTGAAC 4 2 3' arm Oryctolagus_cuniculus mirnest 100 100 -51.7 ...((.((.(((((((((((((((((....(((((...((((((.(((((((((((.(((((((((.(((....)))))))....)))))))).)))))))).)))))).....))))))))))))))))))))))..))....)).. (-51.7)