mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTTTTGTTTTGTTTTGTTTTT ATATAAAACCAAAGGGAAAAA ATGTGTACAGAAATATAAAACCAAAGGGAAAAAAAACTGCCATCTTCAGTCAGGGGTTTTGTTTTGTTTTGTTTTTTTGTCACCT CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGAAAAAGTAAAGGACATTGAGCGCTCCCACCCAAATATCCACAATGGCTGGGGCTAAAGCTGGAAACCCAATATGGGTCCCACATGGGTGGCAGGAACCTGATTACTTGAGCCATCACCACTGTGCCCCAGGGACTGCATTAACAGGAAGCTGGAGTCAGGAGCCAAAACTGGGATTGAACCAGGTGCCCTGATGTGGGAACTACTAACCTAAACACCTGTTCCTTCATGTCATTTTTTAAAGTTTGGGTTATAAATTTCAAAATTTTCAAAAATGTGTACAGAAATATAAAACCAAAGGGAAAAAAAACTGCCATCTTCAGTCAGGGGTTTTGTTTTGTTTTGTTTTTTTGTCACCTCAGCTCTACTGGGCAGTTCCCTGGGGGGTTCAGTAGTTACTCATCCAAAGTTTAATTGTTTTGTCATTTTCTAATGCTGCCGATGCAATGATGTTTTGTGTAGGATGACAAGCCACTGAAATTACGACATCTGTGTGACTCTGTAATTTCTGCACAATCTCCTTAGTTTGAAGGTTCCAGATGTAAACCAGGTTATCCTCTGAACCGGACACAACCCACTTCCCACCAGTAACTGAAAAACTGGC 4 0 3' arm Oryctolagus_cuniculus mirnest 100 100 -16.4 ..(((.(((((((.(((((((.(((.((((.....((((.......))))......)))).))).))))))).)))))))))).. (-16.4)