mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTCCAGGGCTTAGTCAGCGG CCTGGCTGGCACCTGGACTTA TCCAGACTATCAGTCCAGGGCTTAGTCAGCGGGGCCCGGAGTGGCTTCCCTGGCTGGCACCTGGACTTAGGCTATTT GCTGACCCGGCCTAACGACTCCAGACTATCAGTCCAGGGCTTAGTCAGCGGGGCCCGGAGTGGCTTCCCTGGCTGGCACCTGGACTTAGGCTATTTCTGTGCACGTTAAAGCAGAATATTGGAACGGTTGCGCTGAACTTCCAAGTAATTTTTACTGCCACCCAAGATTTAGCCCTGAGGTCTTAATCTCAGGATTTGGGACAGTAAAAGCTGTCGTCCCCTCCCCCTCATCCAGCCGGTGGCAAGCGGGTACTGCGAGCGGTTCCGTCCGTCCCCTTTCGCAGAAATGGCAACGAATGACCACCAGCATTAGCGGAGTCAGGGGACGTGGGAGGGTTGATTGCCTAAACGACTCTGCATCGCCGCCTCTTTTTGAAACTAAGAGAAAATGGTGGGAGGTCAAAAGAAAACTAAATAAACACACAGGCAACTTGTCCTGGGACCTCAACTAAGCAAATGAAGCCGTATTGTGTGTGCTGAGCCTGCAGTTCCCAACCTTCCGGGGAAGATGGGAGGACAGGGCGACAAAGGGCACAGTAGGCATGCCTGGCAGTAAGTGTGACCGCAGCTATCCAGGAGGAAGAGCAGAGGACTGATACCACCCTCCAGCAAGCGAGCGTCCGCCGCGTTGAGAACCGCGCACTCTACCCATCAGCCACGTGACCGGTCCTTTTTTAAAAAAAATT 1 2 5' arm Macaca_nemestrina mirnest 100 mmu-mir-1956 2e-20 -32.2 ...((.(((..(((((((((((.((((((.((((((......)))))).))))))))).))))))))))).)).... (-32.2)