mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGTGTGGAGGGAGAGGCTG GCCTGGCTCTGGACACCTGTG AGGTCCAGCCTGGCTCTGGACACCTGTGTGACATGGGGTGGTGTGTGTTTGAGGGGCTGCCAGGAGGACACAGATGGACGCCTGCTCCGGGTGTGGAGGGAGAGGCTGGCCC TGGAAAATAAATAATTTAAAAGACTAGATTGAATGTCCCTAGATTTTCACACATTCAAAGACTACATTTTTTCAAGAGATGGAATGGGACACAAAGCAAGAATGAACGGTTCTAAACTCTCGAAGAAAGAAACCCGGGACATGGTGGGGATCCCTGGCCTAGGTGTTCAAGGTGGTGGCATCCTAAGCTTCCAGCAGTTCCCCAGCCAGGCTCCACTGTCATTCTGTGGCTGGAGTTACAGAAGCAAACGGTCTACGTCACTGAAACCATGAGATGGTTTCATGCCAACAGGCTTGGCTGATGAGAGGAGAGGGGAGGTGGCTTCTCACTCAGCCGGGGAGGCCCTTATGCTGGGGTGCGGGCCTCTTTGCGCCACGGCAGGCGACCTGCAGCCTCGCGGAGGGGAACCGCGCCACGTCCAGGAGGCCATGTGGCTTCCTCAGCTGGGCTCTGGGGCCCACTGAGAGGTCTGAGGCCCCAGGGGTCACCTAGCCCAGGTCCAGCCTGGCTCTGGACACCTGTGTGACATGGGGTGGTGTGTGTTTGAGGGGCTGCCAGGAGGACACAGATGGACGCCTGCTCCGGGTGTGGAGGGAGAGGCTGGCCCAA 4 0 3' arm Macaca_nemestrina mirnest 100 100 -38.6 .((.(((((((..((((..(((((((.((......(((((((.(((((((...((....))....))))))).))...)))))))..)))))))..))))..))))))))). (-38.6)