mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGGGCAACACAGTGAGACCC GGATCACGTGAGTCCAGAA GCTGAGGCAAGGGGATCACGTGAGTCCAGAAGGTCAAGGTCACAGTGAGCTGTGGCACCACTGCACTCTAGCCTGGGCAACACAGTGAGACCCTGATCCAAA GCCGACAGCACCCTGACCCCAGGGCAACCACTTCCCCAGGCGCACAACCAGGGCCCTCCTGTCTGCAGGAGAATTCACAGCTGGTGGGGGCTCGGCCCCCATGCCATTCACAGCTTTGTCTGGCTCTGTACATTCATCAGCAGGGGCAGGGCGCCACGCCACCAGCCCAGGGGCTCGCCAGGCCCCGGATGCACACAACTCAGGCGGGGCACCCGTGGGAGGGCGTGTATCCTGCAGCAGCACTTGGCACCAGGTGCCAGGCCAGTCAGGTGGGTCCTGGGGCCCCGGAGAGGGCAGCTTGCTGGGCAGTTTCACAAAATGCAGCCCCTGCCCACACCCAGCTGGCTTCAGGCTTTGGATGTCTCCAAACCAAAAACCTCCCACCGAAATCCAGGTGTGATGGCTGGGTGTGACGGCTCATGCCTGTGACCCCAGCGACTTGGGAAGCTGAGGCAAGGGGATCACGTGAGTCCAGAAGGTCAAGGTCACAGTGAGCTGTGGCACCACTGCACTCTAGCCTGGGCAACACAGTGAGACCCTGATCCAAAAACCAAAAACCAAACAAAATCCAGGCATGGCCAAGCGACTCACGGCCGGGCAGGGCCAGTCCTGTCCAGCTGCACGCCGACCGCCATGCCCTGCGCTCATGCCTGCAAGCCACTCAGCTGGAACCTGGCCTCCTCGGATATGCCGAACTGCTCCAGGGGGTCCTTGCCTGTCACCTTCCGGATTTCGTTCCTGTAGAAGACGAG 3 2 3' arm Macaca_nemestrina mirnest Metazoa_SRP 0.00000000002 ssc-mir-1285 0.0003 -30.1 .....((..((((..(((((((.((((((..(((....(((((((....)))))))...)))((......))))))))..))).))))..))))...))... (-30.1)