mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGGGAGGGAGGGTGGAGGGG CTTCCTGCCCTCCCTCTCCTTC GTCCTTTCTTTTCCTTCCTGCCCTCCCTCTCCTTCCTAAGGCAGGTCCAGAGACCAAGCTCTCCCTCTGGCCAGGGAGCCGGGAGGGGAGGGAGGGTGGAGGGGCCAGTGTCCA CGGATACAGGCCCAGAGCCCAGCCCTCCTTCAAAGAAGTGGCCAAGCTAGAGGAGGAAGAGAATAAATAAAGGCACGCCGAGGTGTGATGGGGACTGGACGGGCCCGTCTGGGGCGAGGCAAGGGTGCCCAGGAGACACTGGCCCCAACTTCAGCTGTCCATCGCTGGCCCCACTGCCGGCAGGCTCCGGGGGCAGTGCGAGTGCCCACAAGGAGCAGGGCCCGGACTCCTGCCACCTCCAAGTCCTTTCTTTTCCTTCCTGCCCTCCCTCTCCTTCCTAAGGCAGGTCCAGAGACCAAGCTCTCCCTCTGGCCAGGGAGCCGGGAGGGGAGGGAGGGTGGAGGGGCCAGTGTCCATGTCCCAGGCCATGACCCTGGTGCCTGTCCTGGGCAGGAGCCCAGGTTCACTGTGCGAGGACAAAGGAGCAGGGAGGCAGGCGCCCCAAGCCAGCAGGCCTTTATGCGTCGCCCCCTTGCTTGGCGGCCCCGCCCCGCTCCCAGGCTCCGTCCTCCCACGCACCCTGCCCCCCGGCGCCATACCCGCGGGGCACTCAGGAGTCACACCAGCTTCCACCCTTGTCCAAGGGCCCAGCAGCCCCTCGTGTATCCCTGGACGGCTCCCCAGCTGCCGTGTCCTCCAACTCCTCCTCCTCCCCATCTGTGAACTCCTCCTGGTTGAGGCCGTAGCCAGTGTGGTGTGCGCCAGTCCACCTCGATGGGGAAGACGTCGGCATCCCGCAGCACCGCGTAGCAGTCGTTGTAGTACTTAGACATGGTGGACCACGAGGCGCTGCAGCTGGAACACGATGTCCTGGACGTGCTTCTGGTCCAGCAGTCATCTTCTCCAGCACGTCTGCGCATCTGGGAAAGCGGGCGCCGCGCCTCCTGGCGGC 0 1 3' arm Macaca_nemestrina mirnest 100 100 -53.8 ...........(((((((.(((((((((((((((((...(((.((((....))))..)))((((((......))))))..)))))))))))))))))))))))).......... (-53.8)