mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGACCAGGCTTCATTCC AATGACNCCGGGTCCNAAA TTTCGCGTCATGGTTGTCGAGGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCCATGACTCCATCATGGTTCA CGGACGCGTGGGCTGACACGCGCGCGGAAACAAGATAAATACAGCGTCATCTTCTTCGTTTCGCGTCATGGTTGTCGAGGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCCATGACTCCATCATGGTTCAGGTTCACGGACTCGGCATCGCCGGTGTTCTTGTGAGCTCCACCTGTGCCTCTGTCCATGTGGTCTGAAACAAAACAGACGGTACTCCCCATGCCTGCCTGCAGCTAGCGAAGGTAACAGTACTCCCCATGCCTGCAGCCAGATACTACTGTTTTCTACTCTGCCGTGGCTGCTGCAGTGGACTTGCTCTGGTAGCAAACTGCAGCAAACATTGAGCCGGCCGACCGGCGCACGAGCATGCATAGATACTGTGCAAAGT 4 0 3' arm Hordeum_vulgare mirnest mir-166 4e-38 hvu-MIR166 2e-46 -45.8 .....(((.((((..((((.(((((((((..((.(((((.(((..........(((((.(((....))).)))))))).))))).))..))))))))).)))).)))).)))..... (-45.8)