mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGGCGTGGTGGCGGGCGCCT GAGTTCGAGACCAGCCTGGC ACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACACAGCGAAATCCCACCTCTACTGAAAATACAAAAGTTAGCCAGGCGTGGTGGCGGGCGCCTGTAATCCCA GGTAAGATCTAATCTCATTAGGAACTCCAGAAAGAAAAAAAGAAAAACAGCCCTTACAAAGGAGGACAGTATTAATGACAAAGAATCCCCATGGTTTGGTCACATTAAAAACACAACGCCTTCATTCTTCATCAATAATTATTGGGTGCCTAATAAGTGCAAGGGACTAAGCTAAGCCCTGGGGAAAAAACCAAGAAAAATCTGAAAGAATGGCCTCCAAAAACTTAACGTCCAATATAGGAACATACAGTCTCTGGGAAAGATATTTTAAGTGTAGCTAACCTCCCCCATCCCACCCCCACCAAAAAAAGAAAAAACCTACTAGACTTGGTTTCTTCCATTTACTTTTAGTTTAGCAGCTTCACATAAAAAGCATAAATCTGAAAGTCTTTTAAAATGCATACTTCTACTCGTAAACAAAATTCATTTTCATTAGAAAAAATGCTGAATATTTATTGCAATTAAGAAAAATCTTCGGCTGGGCACAGTGGCTCACACCTGTTATCCTAGCACTTTGGAAGGCCGACACAGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACACAGCGAAATCCCACCTCTACTGAAAATACAAAAGTTAGCCAGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATCGCTTGAATCCTGGGGGGTGGAGGTTGCAGTGAGCCAAGATTGTGCC 3 1 3' arm Macaca_nemestrina mirnest Metazoa_SRP 1e-25 hsa-mir-5096 0.00000000009 -30.665 ......((.((((.(((((..(((((((((((.(((..................................))).))))))).))))..))))).))))....)).. (-30.665)