mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCGGGCAGTGGCTGGATGAA CATCCAGTATGCACGAAGA CCATATCCACAGTCACTGTAAGCATCCAGTATGCACGAAGATGGTTTCGGGCAGTGGCTGGATGAAGCAGATTTGAGATACCCAG TTTATTTGCATGGGTAGTTTTAATAAATGGAGAAAGCACCATTTCAGAAGCTACACTAGCAGGAAAAAATTCCATCAAGCATTTACATAGTAAATTTCTATAGTTTCACAAAAGATTCTTGATCTTACTTGAAGTATACGTGAGGGAAAGAGCCCCCTCAGCAGGTGTTCTCTTTGCTTACAGAAGCAAACTAAGGGACCTAAAACTGGAGGCAAGCCAGGATGCCAAAAAGGGGGAAGAGAAATGATAAAGAACCATTCATAAATTCTACTTCAAGACATTTGTCTAATGACCCTTACATAATAAGTATTTTAGGGCAAACTACCACCCTTTTAAGATAAAAGTACAATCTTAAAAGCTGTAGTTCTCAATTATAGTAATATTTCTTAATTACAGTAATATGTCTCAATACTTTGGACTGCTGGATGTCAAAAGACAGTACCTGGGGCTCATCTATGAGATCTGAACAAATACTTGAAAGGAATTCTCTAGGACTGTGTACTCTCTATTTTGGCTTTTTGAATGAAGCACAGGCAGGCTTCCGCTATCCTCCAGGCAGTGTAATAGTCAAGGAAAAGGGCAACAGTACTGGATCATTCCTTAGACACTAATCAGCTGGGGAAAAAGTTCATTGGCAAAAGTGTCCTCCCAAGAATGGTTTACACCAAGCGGAGAGGACATGTCACTGAAGGGGGAAAGGGAGCCCCCATATCCACAGTCACTGTAAGCATCCAGTATGCACGAAGATGGTTTCGGGCAGTGGCTGGATGAAGCAGATTTGAGATACCCAGCTCTGGAATGAGTCATCTTCTACAGGTTCTTCTTCACTGAGACATGATTCATGTGATCATCTCTGAGGGGCTGAGAGGTG 4 2 3' arm Macaca_nemestrina mirnest 100 100 -26.4 ...((((..(((...((((...((((((((.(((.(((((....))))).)))...))))))))..))))..))).))))..... (-26.4)