mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATGTTGCTTCTTTCTCTCT GGGGGAAGAAGGTCTGGGT GCCGGACCAGGGGGGGAAGAAGGTCTGGGTTTGCGGGAAAACAACAAGCATCCGGCCCAAAGCGTCAGCTCCAAAAGCATCAAAGGACTTGAAAATCTTGCCCCACAGGGCCTTGACGGTAGCCTTGCCTTTCTCGGCCAAACTCATGTTGCTTCTTTCTCTCTTTCGCTCC CCAGTTTGGCATAGGCAGTTTATTCCATTCTTTTTTCACCAGGAGTTACAGGATCGCCCGAAGGGAACCGCTTTCCACACGGAGCAGTTAAGGGGAATTTCTCAAAAAAAGCCAGGGACACGCCACAAAAAAATTTATCCAGGGCCACGGGGACCCCCGGGGGGAACTCCTTGGGAAACATGAGGGCAAGCACCACCAAAAGGCAGGGGAAAAGGATCTTGAAGTGGGCCGGGCCCACTCTCAGGGGGAAGGCGGGCTGCTCGCTGAAATCCAGCAGGCCACCGGCCAGGCCGCCAATCTTGGCCACAGCCGGAGCGACTCCAAACATCACATTCTTCCCGGGGTTCTTCACGGGGGCAAAGTTGGGACTCAGGCCGGACCAGGGGGGGAAGAAGGTCTGGGTTTGCGGGAAAACAACAAGCATCCGGCCCAAAGCGTCAGCTCCAAAAGCATCAAAGGACTTGAAAATCTTGCCCCACAGGGCCTTGACGGTAGCCTTGCCTTTCTCGGCCAAACTCATGTTGCTTCTTTCTCTCTTTCGCTCCCC 2 2 3' arm Anoplopoma_fimbria mirnest 100 100 -44.6 ..((((...(((((((((((((.(.(((((((((((((((.(((...((..(((((.....)).((((.(((............))).))))...((..((((....))))...)))))..)).)))..)))))))..)))))))).)...))))))))))))))))).... (-44.6)