mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGGAGGGGAGGGAGGGCTGG TTGCCCTCTTTCCTCCTCCTCC GCAGCATGCCTGGAGGGAAAGCAGGCAAGGGAGGGAGGGGAGGGAGGGCTGGGGGAGTGGAAATCCATTATATACACAGGCTGGCGGGCTATCCATCCGGAACTGCAAGTCATTTCCTCTCTACCTTGCCCTCTTTCCTCCTCCTCCTCCTCCTCTCAGCACTCCACTTGCTCTA GTATGTACATTCAAAACTTTATTATGGAATACAGTGTAGAAAGCGTTTTCCCAGTCAATGCAAATGCCTGCACAATATTACACAGTGGAGAACAAAACCAATATATAACCCGCAGAAAAAAATAGAAAGAAAATCCTGCTTCCTCTTCTACTCTACTGCCCTCTGTTGGGCTTCTAATGAGCACACTCTGAAAACCAAGGACCCACCCAGCTGCAGCCTCCATATGAACACCATTTCCTCACAGATCTTACCTAGCCATGAGTGAGAAGTGACTGTATTTCTTTCGATGTATTGTTGAGATGGTGAGTGACAAACCTTTAACATGAGCTAACTGAATGAAGATGAACGGACACTCATATTTCATCCCTGCTTTCACATCCCTGCCCCTGACTCATTGCAGCTCTCTCAATGGTGAACGCCTGCCATCTATATACAGGCGACGGTGCTCTGCCTCTGAGGAGTCAAGTGTGCGTTGATGACGGAGAGGTGAGCAGCATGCCTGGAGGGAAAGCAGGCAAGGGAGGGAGGGGAGGGAGGGCTGGGGGAGTGGAAATCCATTATATACACAGGCTGGCGGGCTATCCATCCGGAACTGCAAGTCATTTCCTCTCTACCTTGCCCTCTTTCCTCCTCCTCCTCCTCCTCTCAGCACTCCACTTGCTCTACCAGCAAAATGATTACCAAACCAAAAAAAACAAAAAAACTGCGTTGGCTTACAACTGGACGAAACACCAGACTGAGAATGACAAAACATACACGCAGAGATAATCCAAACCCATCCCCATGC 2 1 5' arm Anoplopoma_fimbria mirnest 100 100 -71.7 ..((((....(((((.((.((.(((...(((((((.(((((((((((((.((.((((.((((((..............((((.((((....(((....))).)))).)))))))))).)))).))..))))))))))))).)))))))))).)).))....)))))..))))... (-71.7)