mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGGTTTTGGTTTCCCCCTAC GTGGACAAGCCATCTGCAA GAATTATTTAGTGTGGACAAGCCATCTGCAATCAAATGATCTAGTTTGTCTTTTATACAAATCATGCTGGAAGTTGACAGAACAGAGAGAAGTTGTGTGGTTTTGGTTTCCCCCTACGGTACAACA GTAAATTCAGTTTTTAATCAACATTTGAAAACAAATTTGACAAACGAAAGACTGTTTTTGCTTTTTATAAACTAGATGTGGTTTTTAGGATTTTAAATCATTTAAGAAATCACATTGTTTTCCAGGGAGAGGAAAGAAATTAAATGACAGTGACACTGAGAAAGCAGATTTCAGAAAGTAAGGAGTAACATATAAGTTATCACTGACACAATCCTTCTTCAGCACCATCTTTAGCAAACCAAAAAAAGCAGTCTCAGGCCTGTACAGTGTGAATATGTGGTCCTTAGAGATTTAAGGGCAGAAGATGAGGGAGATGAGAGAAAAGCAGACTTTGTGCAAGTACATACAGACCCCTTAGATTTTGTGAAAATCCCCAAACAGCAACATGATATCAGTAAACACTAAAAGGTGAAATTTTGTTTGTTGAAATTTAGTCAGGTATTTGATAGCAAGTCTTATTTATATATAAAAGCAGGCTATATTTATCAAATCATCTCCAGAGAGCCCAAATGTCTCAAATAAGCCATTACAGTATTAGTCTGAATTATTTAGTGTGGACAAGCCATCTGCAATCAAATGATCTAGTTTGTCTTTTATACAAATCATGCTGGAAGTTGACAGAACAGAGAGAAGTTGTGTGGTTTTGGTTTCCCCCTACGGTACAACATGAGTCAAGGGTATTAGTTATGTGTTTACTTGGTCTTATCAAAGAGGTGAGACGTTGCACACACAAAAAGCAACCGGGTCCACACATCTTACACCCCAAATCTGCTGGGAA 4 2 3' arm Anoplopoma_fimbria mirnest 100 100 -24.6 ..........(((.((..((((((.(((((....(((..(((..((((((.(((...((........)).)))..))))))....)))...))).)))))...))))))..)).)))......... (-24.6)