mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTGTGTAAATGTACATTTT AGTGATGATTTACACAAAAAT GGCATCTGACAGTGATGATTTACACAAAAATCAGTTTGTGTGTAAATGTACATTTTTGGATCAAT GGGGCGAACGAGAGGCGATCCAGTGGGAGTCTGGTATGGCCCTCGAGCGATCTCTCCCCCTGCTCCAGCAGGAGGAGGAGGTAATCCGTGCAGAAGAAAGGGTCGTAGATATCCATGGGGAAAACAGAAAAAAAAACACTAAACAAAACGCGGAAAACAAATGGGGGAGTAAACACAAAGTTTTTCTAGGTTGGGTCTTCTGTCAAGGTGCTTAATGTGTAGGAGCGAGGAACGCAGAGATGATGGAGAGTCTTTAATTATCCAAATTGGGAAACACAGGGCAGGCAGGAACACACACGTAGCACATCAGGGCTGCATCCGAAAAGTGAAAAATGCTGCCTTTGGAGGAGGCATTCCAAGGTAGGAAGGCATAAAGGCATGTCCGAATTCAATGTTAGCTTCAGTTCCTGTATCCTGAGATGCCTTCATCTGGCCAATTTTTGAAGGCAGCATAGATGTATTCTTTGCTGCCTTTGATATTCCACAATCCTGTGCGTTCCATTTTGTGGACAGTTAAGCTAAAAAAAATAAAGATGGCATCTGACAGTGATGATTTACACAAAAATCAGTTTGTGTGTAAATGTACATTTTTGGATCAATGTTTTCCACTTTTGATGTCATTTCTATCGAGAATTTATTATTGCAGTAATTAAATAATCACTTAGTTATCACCAAAGCTCTCAATTTTTTTCGTGTAGATCATCAAACCGTTACTCCGCCTCAGAAGTCTGTCCGAAATCAGTTTCGTGAGGTGCTTTCATGTGCCTCTGCAAGTCATTGCCTGATAGGGCAGTGAGGCAACAAGTCAGCTGCCTAAGTTTCGGATGCNGCACAGGAGTCAAACGAGACCCGACAGGAANCATG 5 0 3' arm Cyprinus_carpio mirnest 100 100 -14.6 ...((((((.((((...(((((((((.(((....))).)))))))))...)))).)))))).... (-14.6)