mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTTGTTTTTTTTTGTTTTT TGATAAAAAAAAATAAAAAAA GGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCTTTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTGATAAAAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAGATATTTGTTTAG TGGGTTCNNNNTTTNNCACTCGGGATCGGCCATACGGCCGCGACCACCATCCGACTCGAGCGGNCGACATGAATCCTTTTTTCCCGATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCTTTTTTTTTTTTAATTTTTTTTTTTTTTTGGGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCTTTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTGATAAAAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAGATATTTGTTTAGTTTTTTTTTGGGGCCCCCCGGCCGGCCGGGTTTTTTTCCCCCCCCCCCCACCCCCCTTTCTCCCGCCCCGCCGGGGGGGACCCCCCCCTAACACCCCTTCCCCCCCTCCCGCCCGCCCCCCGGTCTTGCTGTAATATAATCCCGCCCCTCCTCGTACCCCCCCACCCCCGCTACCCCTCCACTTCACCTCCCCCCCCCTTCCGCCCCCCTCCTCCCCCTGCCCCCCCGGCCATCTAACCTTAGTACTAGTCATCTTCTGTGCCCGCTCCGCCGCATGCCACACGCCCCGCCCCACCGGCCCCCCCCCCCCCCCCCCCCGGCACCGCGTCAAGGTGCGCGAGTNTACAACCCCTACCCCCCTCCCCCGTCCCCGCCCCCCCCCCCGCGCCCCCCCCCTCCCCCCTCCCCGCCCTCCCCCGCCCCCACCCTGCGCCGCCCCCCTTCCCCTCTGCATCCCCCCCCCGCCACCGCCGCGCCGCCGC 3 0 5' arm Cyprinus_carpio mirnest 100 100 -30.4 .........(((((((((((((((((((((((.....((((((((((((((((((((((.......................))))))))))))))))))))))..)))))))))))))))))))))))........... (-30.4)