mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTCCTCGCGGCTTCGCCAC GGCGGAACCGCGAGGGGATTT GCTTCCTTTCGGAGGCGGAACCGCGAGGGGATTTTAACCACCTGGGAAACCCTTAGCGAAAATTTTCGCCGGGATCTCCACTTGACTACTCTTTGCTCTCCTCGCGGCTTCGCCACTCACGTAAAC CGGACGGAAATATCAGTGACCCTGTTTTCTCTTTTCTCCGTTCTTGGCTAGCGTTGCTGACGGGATTTCGCACTTTAATGCTTCCTTTCGGAGGCGGAACCGCGAGGGGATTTTAACCACCTGGGAAACCCTTAGCGAAAATTTTCGCCGGGATCTCCACTTGACTACTCTTTGCTCTCCTCGCGGCTTCGCCACTCACGTAAACTGCGAAGTGCTTACGCGCAAAATCTCGACAACTACGCTGGCTATACGTTCTTTGACCACGTGCCTGCGAGACCAGGGCGCCTCTTCCGCCTTGTGCAAGACCGCAAAAAATGCACAACATAACAGCGTGCTCATTCACTTCATCCTGACTCCTTCAGTGGGCCGCTGTCAGCAACAAGTACAACAGTCTCCAGCGAGCGTATTTCTGTTTAAACTCTTGGAGCTCCATACGCATCAGGCATTCTTTCAATTGTGTACTTGTGTTGTGAAATGTACATATAGGGACTCCT 4 0 3' arm Montastraea_faveolata mirnest 100 100 -41.7 ...(((....)))((((((.(((((((((((.............(((..(((...(((((....))))).)))...))).................))))))))))).))))))............ (-41.7)