mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCCCTCCTCCTCTCTCCACAT GTGCGGTGGGGAGAAGGTTAC CGCCCCTCATTATGAATCGCCCACCCCTGAGAGCAGAGTGTTCAAATAGGACCCCTCCTCCTCTCTCCACATAGACAGTGAGACCCATGTGCGGTGGGGAGAAGGTTACTCCTCCCAGAGGAGTAGTCTG GATGAGCGCTGGNTAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTNTACCCATTTCAATAAGTTTAATATTCCATTTGTTTGAATGTTTTACAGTACTAATATCGATTAAACACTCTTATGTTTTTTTTTAGATAAAGAGAAAAGTGAGACTAAATTCATTAGGACTGATTATTCTTATTTTTTCGATTAGGGGAGGGGGGTCCACTGAAATGGAGATTTATTAATTTGCCATGGGGGCACTTTTTTCATGTAAGCTTGAGGAATGATTTCCATGTTTTTGATTTTTCTTTAGATTTTGTTGAATGCAGCAATATCCACACTCTGTACGAGTTCATCATTCTTCTCAATCTCCTCAGTTAGAAGGTCAATGGATACCTTGTCGTCCTCAACAACACAGGATATCTGTAGCTTGTGAATCCCATAGGCGAGTGGCACTAGCTTGGAGGCACCCCAGAGGAGGCCGTCCATTTCAATTTTCCTCACTTCCGCCTCCATGGCTTTCATATCGGTCTCATCGTCCCACGGCTTGATGTCCAAGATGATGTTTGACTTGGCAATCAGTGCGGGTTTCTTGGACTTTCTTGCATTGTATTCGGCCAATCGTGCCTCCTTAACGGTATTTGCTGCCTCATCTTCATCGGAATCCGATCCAAAGAGATCCACACCGTCGTCATCATCTTCCACCACCTTTGGGGCAGGTGGTTGGGGTTTAGCAGGAGTGGCCGATTTTGCTGCTCCTCCTGCACCACTCTCCAAAGCACTCACTCGTTCCTGCAGACTAATCCCGAGCTTTTCCATCCCAGCCACAACTGATGTGAGCTTCTTGTTCTCCCTTTCAGGGAAAAAAAGAAGCTCAAAAAGCCCCGTTCCGGGTGTCGAACCTAAAGCAGCATTCCGTCCCTGCGTTCTAAAAAATTTTTAAATATTGCGGGGAAGCTTTTGCTATTTTCCCAACCCCAGAAAAAATCCAGGTACCACTCTTTTGCCGGAATCCTCGAAAATATTCTCTTTCCGGAAACTATTGAACTGGGGCCTTGTGTTGAACACACACTTTTCTCAGAAACAAAAGCACACAAAATTTTTTTAAGAGGGATTTTTTCTGGAAGAACCGAAGTGCCCCCCCCCAACAAAGTTGTGCCTGCTTTCCCGGGGCCAAATTCGAAACATTGTAAAAAGTGGTTTCCGGGGGAAAATTGTATCTCCGCTCCAATATTCACAACCAATAACAACCGGAAAACTATAATGTATAACCCTGGGGGCCCTTAATGAGGGCCTCACCCCATTAATTGCGTTGCCCCCCCGCCCCCTTCTCATGTGAAACTTCTGGGCGCCCCTCATTATGAATCGCCCACCCCTGAGAGCAGAGTGTTCAAATAGGACCCCTCCTCCTCTCTCCACATAGACAGTGAGACCCATGTGCGGTGGGGAGAAGGTTACTCCTCCCAGAGGAGTAGTCTG 5 0 5' arm Lutzomyia_longipalpis mirnest 100 100 -35.9 .((...(((...)))...)).....((((.(((((...)))))...))))...(((.((((((.((.(((((..............))))).)).)))))).))).((((((((...))))))))..... (-35.9)