mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGAAATTTTTTCCATTTTGT AGAAGGAAAAGCCATCGATA GACTGTCGTCGCAGAAGGAAAAGCCATCGATACCATCAATGGGTTTGAAATTTTTTCCATTTTGTATGATCAAA ATACGCGCTGGCTTGAGTTTTTTTTTTTTTTTTTTTACCTCTCTACTCTTACACATTTATTAATTATTATTACAATTTTTCACAGAAACTAGCGAAATTTTCCCATAAATAATTGCGTGAATCATAAGAACCTCATGACGCCTGTGAGGGGAAAATTATTGATTTTTTTGGGCCGCCCTATCTTTCCTTCTCCTAAAAACAGAAACCTTGAAAATCTCTCAAATGGAATGAGATGAGATTTGTCTCGGAGCAGGCACAGAAAATTCGCACTCGCGGCACTACTGTGGAGAGTGACCGTGAACGTGGGCCCCCAGAGTTACTGCGGATTCCCGTTTACAGCACCGTATATGGACAAAACGTTTTGTTTTCCTTGCTGTCGCGATCAAATCTCCACCGTTGCGATAGCCCCGCGCGCGTATGATGGCAAAAGAGTGTTTGAGCTTATCTCTGGTGTCTCCAGAATGCGCGATATCGCCAAGCAAAAATTAGATATTCCATTTAGGAAGGAGAAGAAGGAGGAGGAGGAAATGTTGAGAAGAGCAAGAAAGCTGCTTGATGGTGTGTCGCACAGGTTTTGGGATGATGTTGTGTGGTGGAAGTGGCTGAGAGCCGCACCGGAGCCAAGTGAAAGTACTTCTATGCATATGAGAAGTGTGTTGTGGCCGGTGAAAGGGAAAATGTGCCCCCGGGCGATAGACTGTCGTCGCAGAAGGAAAAGCCATCGATACCATCAATGGGTTTGAAATTTTTTCCATTTTGTATGATCAAAAAAAACTTCCAGCAACATTGAACTTCTCGCGCTTTGGGGACACAAAAACACATCAAAATGAATGAATCTCTCTTTCCAGTTGAATTGTTTGTCTTTTCATCGTTTCATCGGGTGCACTCCTCCTCTTCTTCCTCTTCCCTTTTCGCGCCCATTGCTTTCCCGCTTCCGTGGGGGGCTTTTTGTAAATGAAAAATTGGTGGATTTCCTGGGAAAAAAAAAATTGTGGGCAATTGGAGAAAACCCCTTATACCCTGATCCCGGTTTAATAACAAAACCCAATTAGCATTTTGGAAACCTCTCCCGGCGAAATTTTTTCTCCCTGGCAAAACGAACACAATGGATAGAGGTGCGGACTTTGCAACCCCTTTTTCCCCTGGCTAAGGAATTTTTTCCCCGAAAATATTCCCCCCAAAAAACCTCGCTTTGCCGAAATTTTTTTTAAAAGCAAAACCCCCGATGTGGGCGAAAAATCTCTCCCAAAAAAAAGAGATCTTTTTGGATTTTTTTCGCCAAAGTTTTTTTTTCCAAAGATTTTTGGCGTTGG 3 1 3' arm Lutzomyia_longipalpis mirnest 100 100 -17.5 ....(((((.(((((((((((((...((((..(((....)))..))))...))))))).))))))))))).... (-17.5)