mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGATGGTTTGGTTTTGTTTTT GGAGGAGATGGATATTGGG GAGGAGCAAAGAAAGAAGTTAAGGGAGAAGGAGAAGAGGAGGAGGAGATGGATATTGGGTGAATGATGAAAATCGATACTGGAAATTATAGTGATGAAAATTGAAAGTTTCAGATGGTTTGGTTTTGTTTTTATTTTTACTTTTTGTTCCCTTGTTGATTTATTATTAT GTACAAAAAAGTTGGATGCCTTTAAAAAGTCGCGATCGATTGGTGGTCACAGAAGACTCGGAAGACGACAATGAACACGAGGAAATCCCGTCAGACGGAGAAGAAGGCCCATCGTCCGCAGAATCTCGCAACGGAGATCCTGATGAAACCGTCGCGTTTCCGACGATTCAGAGGAAGAAAAAGAAAATGGTAAAAAAGCTGACACGAAAGGAGCAGAGTATGAAGAAAAGTATCAAGGAATATCGCGTCAAATTGGCCCTGGTTAAACCAGACATCACCACCGACCGGGAAAAGGAGCGAAATTTGAGAAGAATTGCAACAAAGGGTGTCGTGCAATTGTTCAACGCCGTCTCTGACCGTCAATCCACAATGTCTGACGCCGTAAGGGAGAAAATGACGGCTCGCGAGCGGAAAGAAGCACGCGCCGCATTCGACGGAAAGCATTTCGATTCTGAAAAGTTTGCCGATTTTGGATTTGGAGCAGGAGGAGCAAAGAAAGAAGTTAAGGGAGAAGGAGAAGAGGAGGAGGAGATGGATATTGGGTGAATGATGAAAATCGATACTGGAAATTATAGTGATGAAAATTGAAAGTTTCAGATGGTTTGGTTTTGTTTTTATTTTTACTTTTTGTTCCCTTGTTGATTTATTATTATTC 4 2 3' arm Caenorhabditis_japonica mirnest 100 100 -30.5 ..............(((..((((((((((((.(((((.(((((.(((((.(.((((.((((..((((....)))).)))).((((((....((((....))))..)))))).))))...).))))).))))).))))).)))))...)))))))....)))........ (-30.5)