mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACACACACACATACACACAC GTGTGTGTGTGTCTGTCTGAG CTCTTTCTGTGTGTGTGTGTGTGTCTGTCTGAGAGTTCATGCCGTCTGAACCACACATCCCGGCCCTTACACTTCAAACTATAGAATCTGATCATCCCCTTACATATACATATTACACACACACATACACACACACACCCACA GTAATACAGAAACTATCTTTAAAACCAAACTCACCAAGAAGGATGAATGACATTTGTATTTATATATGTAATCTATCATTTCAGATACATGTTTAAACATATTCATTTTCCCCAAAAGAACAACAAGAGTATCAAATCAGAAATGTAAAAATGAAATCAATATATGTGCAGGCTAATAGAAAATAACCCTTTGGCTTTCAAAACACAAATAAAAAAAAAAAATGAAGACTGAGACGACAACAAAAACAACGACAACAAACTTTCAAAGGATTTCCATGCAACAAAGGCAACTGTGAAGAACAATGATCATGGGGACAAGTGGGGAAACAAACACAAAGACAAGCCAAATCTGATGGTGATGTTTTCTTTTTTTCTATCCAGGACACCTGAACAGCCCTCCTCTCTCTTTCTGTGTGTGTGTGTGTGTCTGTCTGAGAGTTCATGCCGTCTGAACCACACATCCCGGCCCTTACACTTCAAACTATAGAATCTGATCATCCCCTTACATATACATATTACACACACACATACACACACACACCCACACCCACAGAGTAAAGTCAATGACACATCTAGGC 2 0 3' arm Esox_lucius mirnest 100 100 -30 .......(((((((((((((((((.(((.(((..((....((((...((........)).))))....))..(((........)))..((..................))..))).))).)))))))))))))))))...... (-30)