mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGCCTGACCAGTCTCAAGA ATGGGTCTGGTTGGGCCCGCA TGGCCGAGAGTGCTTGCGGGCCATGGGTCTGGTTGGGCCCGCAGACTCGGAGTGCGGGCCTGACCAGTCTCAAGACCTGCGTGGTAACTCTGCA GTAGGCCTCGGTGCGGGCTGTGTGCGAGCGGGGCCGGGCTGGGCCGGGCTGGGCGCAGTTGGGGAGGTCGCGGTCACATGGCCGAGAGTGCTTGCGGGCCATGGGTCTGGTTGGGCCCGCAGACTCGGAGTGCGGGCCTGACCAGTCTCAAGACCTGCGTGGTAACTCTGCAGGGACGGCCTCAGGATGCAGAACGACGCCGGCGAGTTTGTGGACCTGTACGTGCCGCGGAAATGCTCCGCAAGCAACCGCATCATTGCTGCCAAGGACCACGCGTCCATCCAGATGAACGTGGCCGAGGTTGATAGGACCACAGGCCGGTTTAATGGCCAGTTTAAAACCTATGGCATCTGCGGGGCCATTCGCAGGATGGGCGAGTCAGATGATTCTATTCTCCGATTGGCTAAGGCTGATGGAATTGTCTCAAAGAACTTTTGAGCAGAAGAAATCGGGAATTTGTTACAAATAAAAGTTTTAAGTACCTGTGAC 4 0 3' arm Leucoraja_erinacea mirnest 100 mmu-mir-3091 1e-37 -47.2 ..((.(((..((((.(((((...((((.(((((((((((((((.........))))))))))))))).))))...)))))..)))).))).)). (-47.2)