mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACGCACGCACACACACAC GTGTTAGGTGCCTGTGTACA GATTGCCCAGCCCAGTGTTAGGTGCCTGTGTACAGGGGAGGTGGAAGACACACACACACACACACGTACACAGACTCGCACACATACGCACGCACACACACACGGACACGCGCA GAGGGTGCGGGGTTCTCATTTCTGAAATGTAGGCATTGTAAAAGGTGTCTCAGGGGAAGCCGGCAATAGAAATCTGCTGAATTCAAAGCATTTCCTAACCTGGCAGGAGCATTGCCAATCCCACTGGAGGCTTTCAGCAAATACATGTGTCGCTGACATGTTGACAGATTGCCCAGCCCAGTGTTAGGTGCCTGTGTACAGGGGAGGTGGAAGACACACACACACACACACGTACACAGACTCGCACACATACGCACGCACACACACACGGACACGCGCACACTCTCACACACACGTACACACGGACACACAAACACACGTACACAGACTCGCACGTATACGCACGCGCACACACACGGACACGCGCACACTCTCACACACAGACATACACACACACACGTACACACACACACACACACACACACAAAGGTCCCGCGTGGGAGTGGTGAATCCGGAAGGTGTCACCCTCGGTCCTCAGGCCAGTTTCCGCGTTACTCCTCCTTGCGGTAACCTCCCCTCCCCAGCCACACTCCTCAGTATCAGAGACCCAGGGCCAGGCACCAGCACATTCTCCAGCCACTAAACTGAATGTCAGGAATATTTTGAAAGGACTTCATAAACGAGTACATTTCTGT 5 1 3' arm Leucoraja_erinacea mirnest 100 100 -23.4 ...(((....((..((((...((((.((((((..(((...(((....((................)).)))...))).......)))))).))))..))))..))....))).. (-23.4)