mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATGCTGGTGCTGATGCCGGG TGTCATCAAGCCATCATACA CTGCCTCTATTGATGCTGGTGCTGATGCCGGGAGACGCTGCTGTGTCATGGGAGAACAAAGGATATCCTCCTGTCATCAAGCCATCATACACACTCATC TCACCGCAGTGTATGGGTTAATGAGGAGTCACATTATCCTGACGCCATCTTGTAGATTATGTTCTCTTACTGTCAGTGATCAACTTTATTGTTTTAGTTCGCTACTGTTGTCGAATAAACCAGTCTGTCTGTTGGAGCTTCAGCATAGATACTGGAGATGAATGTGTTAACTCAGTCACTGCCTCTATTGATGCTGGTGCTGATGCCGGGAGACGCTGCTGTGTCATGGGAGAACAAAGGATATCCTCCTGTCATCAAGCCATCATACACACTCATCAAGATGACAACAACAGCAACAGCTACAGGAACACGGAACATAGCCGCTCCTTGTGAGTTCTCCTCGGAGATCCCGACGACGACCACACAAGTTGAATCTTCTAGATCAGTAATTGTAGATTTCGTCAGGTCACGTTTTACTCGATCAAGGCCACGTCTCAATGTCCCCGTTGACTCCATTCGTNCAACCATGATTCATGCTGGTTGTAGGTGTCGTTACTGCTCTACGGCAGTGTGGTATGACCCTTGTGAGTGTGAAGAAATTTTTTTCTGTGGACGCC 4 1 5' arm Homarus_americanus mirnest 100 100 -23.6 ............(((.((((..(((((.((((.(((((....)))))..((((............)))))))).))))).)))).)))........... (-23.6)