mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGGGTGGGGGGGAGGAGGA ATTCTACCCCCTACCCGCTCA GAATATGGAGCCGGGGGTGGGGGGGAGGAGGACAGTAACCATATCAGGTGAAACATGAAAAGGGAGATTAAACACCCGGGACAACAAGACAACAGATCATTCTACCCCCTACCCGCTCAACACTTTA GAGGCAGATTTATTTTTTATTTTAGGTTTGTATTTTTTCAAAGGCTGATCCTTTTTTTTTTTTTCTTTTACAATCAGGAGTGCTTTATTGAAAAGAATAAAATACAGTACAAAAAAAGAACAAACAAAAAATATGTAAAAAACTTACATTAACATGCGGATCATATATATATCTAGAGGTAATCTCTTGCTCACATAAAAGTTATCGCACAGTGTCCGATGAAAATACATACATTCCAGTTAGTACATTAAGTGAAGACCATGCTAATTAAACCTATCAGGCAAGTCAATAAGCAGGAGAATATGGAGCCGGGGGTGGGGGGGAGGAGGACAGTAACCATATCAGGTGAAACATGAAAAGGGAGATTAAACACCCGGGACAACAAGACAACAGATCATTCTACCCCCTACCCGCTCAACACTTTATGACTTGCCAACCATCATAGAAGTTCAAGGACTACACTACTAAATGATCCATGGGAGCCAAACCTTGTCCAACTTCCTGGGACAACCCCGACTATTATAAGCCAGCCTATAGAGGGGCAATGCCGCATTAATTAAATTTTCCCA 5 0 5' arm Rana_catesbeiana mirnest 100 100 -29.9 .......((((...((((((((((.((((.((..((.......((.((((......................)))).)).........))......)).)))).))))))))))))))......... (-29.9)