mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGAAGTGCGATGTGGATTTC GACTACATACAATTCCATC CGGTATCCATGAGACTACATACAATTCCATCATGAAGTGCGATGTGGATTTCGTAAGGACT GGCGTCTTGGATTCTGGTGATGGTGTATCTCACACTGTCCCAATCTATGAAGGTACGCTTTACCTCATGCTATCCTTCGTCTCGATCTTGCTGGCCGTGATCTCACCGACTACTAATGAAAATCTTAACCGAACGTGGTTACAGTTTCACCACCACTGCTGAACGAGAAATTTTCGTGATATCAAAGAGAAATTGTGCTATGTTGCTTTGGACTTTGAACAAGAAATGGCTCTGCTGCTTCTTCCTGCTTATTGGAGAAATCCTATGAATTGCCCGATGGTCAAGTCATCCAATCGGAAACGAAAGATTCCGTTGCCCAGAAGCTCTATTCCAACCTTCCTTCTTGGGTTGGAGGCATGCGGTATCCATGAGACTACATACAATTCCATCATGAAGTGCGATGTGGATTTCGTAAGGACTTGTACGCTAACACTGTATTGTCTGGAGGTACCACCATGTACTCTGGTTTGCCGACAGAATGCAGAAAGAAATTACTGCTTTGGCTCCATCCACAATGAAAATCAAGTAATTGCTCCACCTGAGCGAAAATACTCAGTATGGATTGGAGGATCTATCTTGGCTTCTTGTCTACCTTCCAACAGATGTGATCTCCAAACAGGAGTACGACGAATCAGGCTCATCCATGTGGCACAGAAAGTGCTTCTAAATACCTTC 4 2 3' arm Myzus_persicae mirnest 100 gga-mir-3533 0.000000003 -13.3 .....(((((((((((((((.((.(((......))).))..)))))).))))))..))).. (-13.3)