mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCCGTTCCTAAATATAAGTC CTATATGTCTACATACGGAGCA CATAATACTTCCTCCGTTCCTAAATATAAGTCTTTTAAGCGATTTCACTATATGTCTACATACGGAGCAAAATG CAGGCATGCATCACATTCCAAACTTGTTCCTCAGGAACATGAATCTCACAACAACAATAAAGACACAGATAGAGGAGATATCTCTGCAACAGAAGTAATGCATTCCACCAAATCCATTACATGTCATATATACTACGAGACGGGCAATACGAGATTGGAATGCGCAAGGTATCGGAGGCTGCTGAGCACGCATAACATAGCCAGTTCCGAGCACGACCCTTATTACAACATTATTGAAGCTTCAGGTGTACCGATGCGTCGAGTTGATCCAGCATAAAGATTTAAGAACTCGCGAGCAACTTCTTGATGTCCTTCTCGATGCTGAGGGGGGAGGTGGTCGGCGCGTAGCGATCCACAACATTCCCATCCTTGTCAACCAAGAACTTGGAGAAGTTCCATTTGATGTTGTCCCCGAAGAGACTGCCTTTGCTTGACTTCAGAAACTTGTAGACAGGTGCAACATTGTCACCATTGACATCAACCTTGTCAAAAATTGGATACTCGGCCTTGAAGCGAGTGCAAGCAAACTGAACAATTTCCTCATTAGTGCCAGGTTCCTGCCCACCAAACTGGTTGCATGGGAAAGCAAGGATCTCAAAACCTGTTGGTCAAATCAAATTGTTAGCATAATACTTCCTCCGTTCCTAAATATAAGTCTTTTAAGCGATTTCACTATATGTCTACATACGGAGCAAAATG 5 1 5' arm Hordeum_vulgare mirnest MIR1122 1e-27 tae-MIR1126 0.00000005 -9.9 ........((.((((((...((.((((((((.....((....))..))).))))).))...)))))).)).... (-9.9)